Předchozí ročníky
Cena Josefa Chmelíka za rok 2018
- Fabrik I et al. The Early Dendritic Cell Signaling Induced by Virulent Francisella tularensis Strain Occurs in Phases and Involves the Activation of Extracellular Signal-Regulated Kinases (ERKs) and p38 In the Later Stage. Molecular & Cellular Proteomics. 2018, 17, 81–94. DOI: 10.1074/mcp.RA117.000160.
- Garlíková Z et al. Generation of a Close-to-Native In Vitro System to Study Lung Cells–Extracellular Matrix Crosstalk. Tissue Engineering Part C: Methods. 2017, 24, 1–13. DOI: 10.1089/ten.tec.2017.0283.
- Kuntová B et al. Transcriptomic and Proteomic Profiling Revealed High Proportions of Odorant Binding and Antimicrobial Defense Proteins in Olfactory Tissues of the House Mouse. Front Genet. 2018, 9, 26. DOI: 10.3389/fgene.2018.00026.
- Ledvinová D et al. Filter-Aided Sample Preparation Procedure for Mass Spectrometric Analysis of Plant Histones. Front Plant Sci. 2018, 9, 1373. DOI: 10.3389/fpls.2018.01373.
- Lenčo J et al. Conventional-Flow Liquid Chromatography–Mass Spectrometry for Exploratory Bottom-Up Proteomic Analyses. Anal Chem. 2018, 90, 5381–9. DOI: 10.1021/acs.analchem.8b00525.
- Melenovsky V et al. Kidney Response to Heart Failure: Proteomic Analysis of Cardiorenal Syndrome. KBR. 2018, 43, 1437–50. DOI: 10.1159/000493657.
- Rehulka P et al. Microgradient separation technique for purification and fractionation of permethylated N-glycans before mass spectrometric analyses. Journal of Separation Science. 2018, 41, 1973–82. DOI: 10.1002/jssc.201701339.
- Rozbeský D et al. Impact of Chemical Cross-Linking on Protein Structure and Function. Anal Chem. 2018, 90, 1104–13. DOI: 10.1021/acs.analchem.7b02863.
Vítězná práce
- Lenčo J et al. Conventional-Flow Liquid Chromatography–Mass Spectrometry for Exploratory Bottom-Up Proteomic Analyses. Anal Chem. 2018, 90, 5381–9. DOI: 10.1021/acs.analchem.8b00525.
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Cena Josefa Chmelíka za rok 2017
- Bočánek O et al. Evaluation of sample preparation protocols for spider venom profiling by MALDI-TOF MS. Toxicon. 2017, 133, 18–25. DOI: 10.1016/j.toxicon.2017.04.008.
- Flodrova D et al. Consequences of the natural retinoid/retinoid X receptor ligands action in human breast cancer MDA-MB-231 cell line: Focus on functional proteomics. Toxicology Letters. 2017, 281, 26–34. DOI: 10.1016/j.toxlet.2017.09.001.
- Grochalová M et al. Deep coverage of the beer proteome. Journal of Proteomics. 2017, 162, 119–24. DOI: 10.1016/j.jprot.2017.05.001.
- Kupcik R et al. New Interface for Purification of Proteins: One-Dimensional TiO2 Nanotubes Decorated by Fe3O4 Nanoparticles. ACS Appl Mater Interfaces. 2017, 9, 28233–42. DOI: 10.1021/acsami.7b08445.
- Procházková I et al. Targeted proteomics driven verification of biomarker candidates associated with breast cancer aggressiveness. Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics. 2017, 1865, 488–98. DOI: 10.1016/j.bbapap.2017.02.012.
- Stopkova R et al. On the tear proteome of the house mouse (Mus musculus musculus) in relation to chemical signalling. PeerJ. 2017, 5, e3541. DOI: 10.7717/peerj.3541.
- Takáč T et al. Feedback Microtubule Control and Microtubule-Actin Cross-talk in Arabidopsis Revealed by Integrative Proteomic and Cell Biology Analysis of KATANIN 1 Mutants. Molecular & Cellular Proteomics. 2017, 16, 1591–609. DOI: 10.1074/mcp.M117.068015.
- Zimmermannova O et al. An activating mutation of GNB1 is associated with resistance to tyrosine kinase inhibitors in ETV6-ABL1 -positive leukemia. Oncogene. 2017, 36, 5985–94. DOI: 10.1038/onc.2017.210.
Vítězná práce
- Procházková I et al. Targeted proteomics driven verification of biomarker candidates associated with breast cancer aggressiveness. Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics. 2017, 1865, 488–98. DOI: 10.1016/j.bbapap.2017.02.012.
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Cena Josefa Chmelíka za rok 2016
- Fíla J et al. Phosphoproteomics Profiling of Tobacco Mature Pollen and Pollen Activated in vitro. Mol Cell Proteomics. 2016, 15, 1338–1350. DOI: 10.1074/mcp.M115.051672.
- Jágr M et al. Proteomic analysis of human tooth pulp proteomes – Comparison of caries-resistant and caries-susceptible persons. Journal of Proteomics. 2016, 145, 127–136. DOI: 10.1016/j.jprot.2016.04.022.
- Řehulková H et al. Identification of Novel Biomarker Candidates for Hypertrophic Cardiomyopathy and Other Cardiovascular Diseases Leading to Heart Failure. Physiol Res. 2016, 65, 751–762. (pdf)
- Tylečková J et al. Surface N-glycoproteome patterns reveal key proteins of neuronal differentiation. Journal of Proteomics. 2016, 132, 13–20. DOI: 10.1016/j.jprot.2015.11.008.
- Vít O et al. Large-scale identification of membrane proteins based on analysis of trypsin-protected transmembrane segments. Journal of Proteomics. 2016, 149, 15–22. DOI: 10.1016/j.jprot.2016.03.016.
Vítězná práce
- Vít O et al. Large-scale identification of membrane proteins based on analysis of trypsin-protected transmembrane segments. Journal of Proteomics. 2016, 149, 15–22. DOI: 10.1016/j.jprot.2016.03.016.
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Cena Josefa Chmelíka za rok 2015
- Bouchal P et al. Combined Proteomics and Transcriptomics Identifies Carboxypeptidase B1 and Nuclear Factor kappaB (NF-kappaB) Associated Proteins as Putative Biomarkers of Metastasis in Low Grade Breast Cancer. Mol Cell Proteomics. 2015, 14, 1814–30. DOI: 10.1074/mcp.M114.041335.
- Flodrová D et al. Proteomic analysis of changes in the protein composition of MCF-7 human breast cancer cells induced by all-trans retinoic acid, 9-cis retinoic acid, and their combination. Toxicol Lett. 2015, 232, 226–32. DOI: 10.1016/j.toxlet.2014.09.030.
- Ječmen T et al. Photo-initiated crosslinking extends mapping of the protein-protein interface to membrane-embedded portions of cytochromes P450 2B4 and b5. Methods. 2015, 89, 128–37. DOI: 10.1016/j.ymeth.2015.07.015.
- Lenčo J et al. Proteomic investigation of embryonic rat heart-derived H9c2 cell line sheds new light on the molecular phenotype of the popular cell model. Exp Cell Res. 2015, 339, 174-186. DOI: 10.1016/j.yexcr.2015.10.020.
- Lorkova L et al. Detailed Functional and Proteomic Characterization of Fludarabine Resistance in Mantle Cell Lymphoma Cells. PLOS ONE. 2015, 10, e0135314. DOI: 10.1371/journal.pone.0135314.
- Novák J et al. Roles of Proteome Dynamics and Cytokinin Signaling in Root to Hypocotyl Ratio Changes Induced by Shading Roots of Arabidopsis Seedlings. Plant Cell Physiol. 2015, 56, 1006-18. DOI: 10.1093/pcp/pcv026.
Vítězná práce
- Lenčo J et al. Proteomic investigation of embryonic rat heart-derived H9c2 cell line sheds new light on the molecular phenotype of the popular cell model. Exp Cell Res. 2015, 339, 174-186. DOI: 10.1016/j.yexcr.2015.10.020.
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Cena Josefa Chmelíka za rok 2014
- Danihlík J et al. A sensitive quantification of the peptide apidaecin 1 isoforms in single bee tissues using a weak cation exchange pre-separation and nanocapillary liquid chromatography coupled with mass spectrometry. Journal of Chromatography A. 2014, 1374, 134–44. DOI: 10.1016/j.chroma.2014.11.041.
- Fabrik I et al. Application of SILAC Labeling to Primary Bone Marrow-Derived Dendritic Cells Reveals Extensive GM-CSF-Dependent Arginine Metabolism. J Proteome Res. 2014, 13(2), 752–62. DOI: 10.1021/pr4007798.
- Jarkovska K et al. Revelation of fibroblast protein commonalities and differences and their possible roles in wound healing and tumourigenesis using co-culture models of cells. Biol Cell. 2014, 106(7), 203–18. DOI: 10.1111/boc.201400014.
- Klanova M et al. Downregulation of deoxycytidine kinase in cytarabine-resistant mantle cell lymphoma cells confers cross-resistance to nucleoside analogs gemcitabine, fludarabine and cladribine, but not to other classes of anti-lymphoma agents. Molecular Cancer. 2014, 13(1), 1. DOI: 10.1186/1476-4598-13-159.
- Lenco J et al. Changes in proteome of the Δhfq strain derived from Francisella tularensis LVS correspond with its attenuated phenotype. Proteomics. 2014, 14(21-22), 2400–9. DOI: 10.1002/pmic.201400198.
Vítězná práce
- Danihlík J et al. A sensitive quantification of the peptide apidaecin 1 isoforms in single bee tissues using a weak cation exchange pre-separation and nanocapillary liquid chromatography coupled with mass spectrometry. Journal of Chromatography A. 2014, 1374, 134–44. DOI: 10.1016/j.chroma.2014.11.041.
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Cena Josefa Chmelíka za rok 2013
- Chamrád I et al. A Miniaturized Chemical Proteomic Approach for Target Profiling of Clinical Kinase Inhibitors in Tumor Biopsies. J Proteome Res. 2013, 12(9), 4005–17. DOI: 10.1021/pr400309p.
- Hernychova L et al. Identification of a second Nutlin-3 responsive interaction site in the N-terminal domain of MDM2 using hydrogen/deuterium exchange mass spectrometry. Proteomics. 2013, 13(16), 2512–25. DOI: 10.1002/pmic.201300029.
- Hrabakova R et al. Cancer Cell Resistance to Aurora Kinase Inhibitors: Identification of Novel Targets for Cancer Therapy. J Proteome Res. 2013, 12(1), 455–69. DOI: 10.1021/pr300819m.
- Jankovicova B et al. Overlap of epitopes recognized by anti-carbonic anhydrase I IgG in patients with malignancy-related aplastic anemia-like syndrome and in patients with aplastic anemia. Immunology Letters. 2013, 153(1–2), 47–9. DOI: 10.1016/j.imlet.2013.07.006.
- Krenkova J, Foret F. Nanoparticle-modified monolithic pipette tips for phosphopeptide enrichment. Anal Bioanal Chem. 2012, 405(7), 2175–83. DOI: 10.1007/s00216-012-6358-z.
- Selicharová I et al. Effects of hyperhomocysteinemia and betaine–homocysteine S-methyltransferase inhibition on hepatocyte metabolites and the proteome. Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics. 2013, 1834(8), 1596–606. DOI: 10.1016/j.bbapap.2013.05.009.
- Takáč T et al. Vesicular Trafficking and Stress Response Coupled to PI3K Inhibition by LY294002 as Revealed by Proteomic and Cell Biological Analysis. J Proteome Res. 2013, 12(10), 4435–48. DOI: 10.1021/pr400466x.
Vítězná práce
- Takáč T et al. Vesicular Trafficking and Stress Response Coupled to PI3K Inhibition by LY294002 as Revealed by Proteomic and Cell Biological Analysis. J Proteome Res. 2013, 12(10), 4435–48. DOI: 10.1021/pr400466x.
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Cena Josefa Chmelíka za rok 2012
- Balonova L et al. Characterization of Protein Glycosylation in Francisella tularensis subsp. holarctica. Mol Cell Proteomics. 2012, 11(7), M111.015016. DOI: 10.1074/mcp.M111.015016.
- Baresova V et al. Mutations of ATIC and ADSL affect purinosome assembly in cultured skin fibroblasts from patients with AICA-ribosiduria and ADSL deficiency. Hum Mol Genet. 2012, 21(7), 1534–43. DOI: 10.1093/hmg/ddr591.
- Chalupová J et al. MALDI-based intact spore mass spectrometry of downy and powdery mildews. J Mass Spectrom. 2012, 47(8), 978–86. DOI: 10.1002/jms.3046.
- Fíla J et al. Revealing phosphoproteins playing role in tobacco pollen activated in vitro. Proteomics. 2012, 12(21), 3229–50. DOI: 10.1002/pmic.201100318.
- Franc V et al. Analysis of N-glycosylation in maize cytokinin oxidase/dehydrogenase 1 using a manual microgradient chromatographic separation coupled offline to MALDI-TOF/TOF mass spectrometry. Journal of Proteomics. 2012, 75(13), 4027–37. DOI: 10.1016/j.jprot.2012.05.013.
- Grebeňová D et al. Proteins implicated in the increase of adhesivity induced by suberoylanilide hydroxamic acid in leukemic cells. Journal of Proteomics. 2012, 77, 406–22. DOI: 10.1016/j.jprot.2012.09.014.
- Takáč T et al. Wortmannin Treatment Induces Changes in Arabidopsis Root Proteome and Post-Golgi Compartments. J Proteome Res. 2012, 11(6), 3127–42. DOI: 10.1021/pr201111n.
- Tambor V et al. Amniotic Fluid Cathelicidin in PPROM Pregnancies: From Proteomic Discovery to Assessing Its Potential in Inflammatory Complications Diagnosis. PLoS ONE. 2012, 7(7), e41164. DOI: 10.1371/journal.pone.0041164.
- Žd’árská M et al. Proteome Analysis in Arabidopsis Reveals Shoot- and Root-Specific Targets of Cytokinin Action and Differential Regulation of Hormonal Homeostasis. Plant Physiol. 2013, 161(2), 918–30. DOI: 10.1104/pp.112.202853.
Vítězná práce
- Tambor V et al. Amniotic Fluid Cathelicidin in PPROM Pregnancies: From Proteomic Discovery to Assessing Its Potential in Inflammatory Complications Diagnosis. PLoS ONE. 2012, 7(7), e41164. DOI: 10.1371/journal.pone.0041164.
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Cena Josefa Chmelíka za rok 2011
Přihlášené práce
- Dresler J et al. Francisella tularensis membrane complexome by blue native/SDS-PAGE. Journal of Proteomics. 2011, 75(1), 257–69. DOI: 10.1016/j.jprot.2011.05.006.
- Jarkovska K et al. Development of ovarian hyperstimulation syndrome: interrogation of key proteins and biological processes in human follicular fluid of women undergoing in vitro fertilization. Mol Hum Reprod. 2011, 17(11), 679–92. DOI: 10.1093/molehr/gar047.
- Pimková K et al. Surface plasmon resonance biosensor for the detection of VEGFR-1—a protein marker of myelodysplastic syndromes. Anal Bioanal Chem. 2011, 402(1), 381–7. DOI: 10.1007/s00216-011-5395-3.
- Rozbesky D et al. Chemical Cross-Linking and H/D Exchange for Fast Refinement of Protein Crystal Structure. Anal Chem. 2012, 84(2), 867–70. DOI: 10.1021/ac202818m.
- Skalnikova H et al. Cancer Drug-Resistance and a Look at Specific Proteins: Rho GDP-Dissociation Inhibitor 2, Y-Box Binding Protein 1, and HSP70/90 Organizing Protein in Proteomics Clinical Application. J Proteome Res. 2011, 10(2), 404–15. DOI: 10.1021/pr100468w.
- Tambor V et al. CysTRAQ — A combination of iTRAQ and enrichment of cysteinyl peptides for uncovering and quantifying hidden proteomes. Journal of Proteomics. 2012, 75(3), 857–67. DOI: 10.1016/j.jprot.2011.09.027.
Vítězná práce
- Tambor V et al. CysTRAQ — A combination of iTRAQ and enrichment of cysteinyl peptides for uncovering and quantifying hidden proteomes. Journal of Proteomics. 2012, 75(3), 857–67. DOI: 10.1016/j.jprot.2011.09.027.
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